PCI: altera: Reorder read/write functions

commit f8be11ae3d2c9a1338da37ff91ff4c65922d21be upstream.

Move cra_writel(), cra_readl(), and altera_pcie_link_is_up() so a future
patch can use them in altera_pcie_retrain().  No functional change
intended.

Signed-off-by: Bjorn Helgaas <bhelgaas@google.com>
Cc: Claudius Heine <claudius.heine.ext@siemens.com>
Signed-off-by: Greg Kroah-Hartman <gregkh@linuxfoundation.org>