Fix using variable intermediates.COMMON before defining.

In commit e9dd9f2b we moved "include $(BUILD_SYSTEM)/android_manifest.mk"
forward before the variable intermediates.COMMON gets defined. That's a
mistake.
This change replaced the tentative variables
package_expected_intermediates_COMMON and guessed_intermediates with
their proper counterparts defined in base_rules.mk.
If their values differ in the two file, that's an error and we should
fix.

Bug: 18168693
Change-Id: I2bf17b0476b4a7f97810fbb0bde7630eb8878b53