jacoco-report-classes-all.jar doesn't depend on fake modules

The reason that the jar file depended on modules_to_install was to
collect files from other partitions, not just system. It isn't the
intention to gather fake modules like phony modules and more importantly
their dependencies (LOCAL_REQUIRE_MODULES). This change explicitly
filters out the fake modules to make the intent clearer.

In fact, the jar file depending on fake modules can have a side effect
that overridden modules are installed. It can happen as follows:

PRODUCT_PACKAGES += A B C

LOCAL_MODULE := A
LOCAL_REQUIRED_MODULES := B
include $(BUILD_PHONY_PACKAGE)

LOCAL_MODULE := B
include $(BUILD_XXX)
...

LOCAL_MODULE := C
LOCAL_OVERRIDES_MODULES := B
include $(BUILD_XXX)

modules_to_install is set to

out/target/product/xxx/fake_packages/A-timestamp
out/target/product/xxx/system/.../C

; B is correctly overridden.

But there still is an order-only dependency from A to B which is created
by add-all-target-to-target-required-modules-deps. Unfortunately,
overridden isn't take into account here.

So, if the jacoco jar file depends on modules_to_install, both B and C
are installed. And if the creation of system.img happens later, the two
are included together, which is an error.

A preferred way of fixing this is to amend
add-all-target-to-target-required-modules-deps so that override is take
into account. However, it will likely to require more Make tricks. This
change takes a much easier path; pruning the fake packages from the
dependencies so that its dependencies which might be wrong can't be
installed.

Bug: 175400393
Test: build/soong/soong_ui.bash --make-mode SKIP_ABI_CHECKS=true
SOONG_COLLECT_JAVA_DEPS=true TARGET_PRODUCT=cf_x86_phone
TARGET_BUILD_VARIANT=userdebug
TARGET_USERDATAIMAGE_PARTITION_SIZE=17179869184 droid dist
DIST_DIR=out/dist EMMA_INSTRUMENT=true EMMA_INSTRUMENT_FRAMEWORK=true
CLANG_COVERAGE=true NATIVE_COVERAGE_PATHS="*"
NATIVE_COVERAGE_EXCLUDE_PATHS="art bionic/libc device"
continuous_instrumentation_tests continuous_native_tests device-tests
platform_tests
No com.android.art.apex in system.img

Change-Id: Ie8a917b7c3985c3a4f19372a4430accd84124e83