tile PCI RC: handle case that PCI link is already up

If we are rebooting (e.g. via kexec) then the PCI RC link may
already be up.  In that case, we don't want to do the software
fixup to force the link up, since that can degrade it to Gen1.

Signed-off-by: Chris Metcalf <cmetcalf@tilera.com>