Close inherited PIPE before doing work

Gmake in Darwin has file descriptor leak.
In a full build, ota_from_target_files will inherits
more than 2000 open PIPEs from gmake and fails in a call to select.select().
This change fixes the build by closing the PIPEs before doing real work.

Change-Id: Ife021382198642a97bbbf0b623e4f24f3d86b2b2